STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kduI4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. (280 aa)    
Predicted Functional Partners:
kduD
2-deoxy-D-gluconate 3-dehydrogenase; Protein synonym:2-keto-3-deoxygluconate oxidoreductase.
 
 0.993
OBV_11510
Protein synonym:5-keto-D-gluconate 5-reductase.
  
 0.935
OBV_11530
Hypothetical protein.
  
  
 0.804
eda
4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate; Bifunctional protein.
 
  
 0.787
kdgK
2-dehydro-3-deoxygluconokinase; Protein synonym:2-keto-3-deoxygluconokinase; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.781
OBV_11550
Putative zinc-containing alcohol dehydrogenase.
       0.717
OBV_11580
Putative transporter.
 
     0.704
OBV_11570
Putative transporter.
 
     0.684
OBV_11480
Hypothetical protein.
       0.646
OBV_11560
Oxidoreductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.638
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.