STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBV_15080Putative TetR family transcriptional regulator. (208 aa)    
Predicted Functional Partners:
OBV_15070
ABC transporter permease/ATP-binding protein.
 
     0.902
OBV_15060
ABC transporter permease/ATP-binding protein.
 
     0.899
OBV_14820
ABC transporter permease/ATP-binding protein.
 
     0.758
OBV_14830
ABC transporter permease/ATP-binding protein.
 
     0.756
OBV_15100
Putative ABC transporter permease/ATP-binding protein.
 
     0.607
OBV_15110
Putative ABC transporter permease/ATP-binding protein.
 
     0.591
OBV_42960
Hypothetical protein.
  
    0.534
OBV_15090
Putative MarR family transcriptional regulator.
 
     0.461
OBV_42950
Hypothetical protein.
  
     0.457
OBV_44180
Putative drug resistance protein.
  
     0.436
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.