STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fchA-2Methenyltetrahydrofolate cyclohydrolase. (210 aa)    
Predicted Functional Partners:
OBV_12230
Putative glutamate formimidoyltransferase.
 
  0.996
OBV_12330
Putative glutamate formimidoyltransferase.
 
  0.996
folD-2
Methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
    
 0.981
fhs-2
Formate--tetrahydrofolate ligase; Protein synonym:formyltetrahydrofolate synthetase; Belongs to the formate--tetrahydrofolate ligase family.
    
 0.961
OBV_38960
Glycine cleavage T protein/serine hydroxymethyltransferase; Bifunctional protein; protein synonym:aminomethyltransferase/serine hydroxymethyltransferase.
 
 
 0.949
folD
Methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
    
 0.921
OBV_12240
Methenyltetrahydrofolate cyclohydrolase.
  
  
 
0.917
fhs
Formate--tetrahydrofolate ligase; Protein synonym:formyltetrahydrofolate synthetase; Belongs to the formate--tetrahydrofolate ligase family.
    
 0.917
OBV_15670
Putative 5-formyltetrahydrofolate cyclo-ligase family protein; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
    
 0.912
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
    
 0.908
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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