Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hupBPutative uptake hydrogenase subunit HupB. (629 aa)    
Predicted Functional Partners:
hupA
Putative uptake hydrogenase subunit HupA.
 
 0.999
hupC
Putative uptake hydrogenase subunit HupC.
 0.999
OBV_29610
Putative iron hydrogenase.
 
 
 0.996
OBV_29400
Glutamate synthase.
 
 
 0.994
gltD
Glutamate synthase small subunit; Protein synonym:GLTS beta chain; protein synonym:NADPH-GOGAT; protein synonym:glutamate synthase [NADPH] beta subunit.
 
 
 0.984
rnfB
Electron transport complex protein RnfB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
  
 0.978
OBV_00570
Putative iron hydrogenase.
 
 
 0.977
OBV_43640
Hypothetical protein.
  
 
 0.967
OBV_34930
Putative oxidoreductase.
 
 
 0.966
OBV_07250
Hypothetical protein.
  
 0.964
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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