Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OBV_16680ABC transporter ATP-binding protein. (230 aa)    
Predicted Functional Partners:
OBV_02550
Putative drug efflux ABC transporter permease protein.
 
 0.979
OBV_21110
Putative drug efflux ABC transporter permease protein.
 
 0.979
OBV_16690
Hypothetical protein.
 
 0.962
OBV_02500
Hypothetical protein.
  
 0.953
OBV_24410
Putative ABC transporter ATP-binding protein.
 
 
0.871
OBV_41170
Putative ABC transporter permease protein.
 
 
 
 0.855
OBV_26630
Putative osmoprotectant ABC transporter permease/osmoprotectant-binding protein.
    
  0.737
OBV_02530
Putative drug efflux protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.722
OBV_08140
Hypothetical protein.
  
 0.710
OBV_36830
ABC transporter ATP-binding protein.
 
 
0.697
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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