STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBV_17840Hypothetical protein. (577 aa)    
Predicted Functional Partners:
OBV_39880
Putative surface layer protein.
 
   0.801
OBV_39870
Putative surface layer protein.
 
   0.788
OBV_02080
Hypothetical protein.
  
     0.728
OBV_04020
Putative surface layer protein.
 
    0.717
OBV_21120
Putative surface layer protein.
 
    0.694
OBV_13010
Hypothetical protein; Belongs to the SEDS family.
 
   0.683
OBV_25860
Hypothetical protein; Belongs to the SEDS family.
 
   0.649
OBV_22510
Putative surface layer protein.
 
   0.638
OBV_28950
Putative MarR family transcriptional regulator.
  
     0.618
OBV_02300
Hypothetical protein.
  
 
   0.593
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.