STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoIIIAEPutative stage III sporulation protein AE. (357 aa)    
Predicted Functional Partners:
spoIIIAD
Putative stage III sporulation protein AD.
 
  
 0.991
spoIIIAC
Stage III sporulation protein AC.
 
  
 0.988
spoIIIAA
Stage III sporulation protein AA.
 
  
 0.973
spoIIIAG
Putative stage III sporulation protein AG.
 
  
 0.972
spoIIIAH
Putative stage III sporulation protein AH.
 
  
 0.963
spoIIID
Stage III sporulation protein D.
  
    0.904
spoIIP
Stage II sporulation protein P.
  
   
 0.827
spoIIIAF
Putative stage III sporulation protein AF.
       0.796
OBV_21480
Putative peptidase; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
    0.788
OBV_35770
Hypothetical protein.
  
    0.778
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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