STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBV_24270Aspartate aminotransferase. (396 aa)    
Predicted Functional Partners:
pheA
Chorismate mutase/prephenate dehydratase; Bifunctional protein; protein synonym:P-protein.
 
 
 0.928
ldhA
Protein synonym:fermentative D-lactate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.889
OBV_24290
Oxidoreductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
   0.773
hutH
Histidine ammonia-lyase; Protein synonym:histidase; Belongs to the PAL/histidase family.
   
  
 0.662
ggt
Gamma-glutamyltranspeptidase.
      
 0.643
rbo
Desulfoferrodoxin; Protein synonym:SOR; protein synonym:dfx; protein synonym:superoxide reductase.
   
  
 0.628
fliC
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
   
  
 0.627
ask
Aspartokinase; Protein synonym:aspartate kinase; Belongs to the aspartokinase family.
  
 0.620
gdh
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 
 0.544
OBV_24260
Putative oxidoreductase.
  
    0.531
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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