STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBV_26520Na(+)-transporting decarboxylase carboxyltransferase. (453 aa)    
Predicted Functional Partners:
OBV_10920
Na(+)-transporting decarboxylase biotin carrier protein.
 
 0.994
OBV_10930
Na(+)-transporting decarboxylase; Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD).
 
 
 0.987
accC
acetyl-CoA carboxylase biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
  
 0.979
OBV_01090
Pyruvate-ferredoxin (flavodoxin) oxidoreductase.
  
 
 0.957
OBV_35340
Pyruvate-ferredoxin (flavodoxin) oxidoreductase.
  
 
 0.957
OBV_45490
Pyruvate-ferredoxin (flavodoxin) oxidoreductase.
  
 
 0.957
OBV_28860
Pyruvate-ferredoxin (flavodoxin) oxidoreductase.
  
 
 0.939
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 
 0.926
pyc
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
 
  
0.924
ppdK
Protein synonym:pyruvate orthophosphate dikinase; Belongs to the PEP-utilizing enzyme family.
    
 0.922
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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