STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBV_26660GntR family transcriptional regulator. (226 aa)    
Predicted Functional Partners:
OBV_26630
Putative osmoprotectant ABC transporter permease/osmoprotectant-binding protein.
 
     0.904
OBV_26650
Putative osmoprotectant ABC transporter ATP-binding protein.
 
     0.895
OBV_26640
Putative osmoprotectant ABC transporter permease protein.
 
     0.872
OBV_13660
Putative AraC family transcriptional regulator.
  
  
 0.570
OBV_14740
Putative AraC family transcriptional regulator.
  
  
 0.570
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.524
OBV_28030
Putative Xre family DNA-binding protein.
  
  
 0.522
OBV_31010
Putative Xre family DNA-binding protein.
  
  
 0.522
OBV_43480
Hypothetical protein.
  
  
 0.483
OBV_08880
Hypothetical protein.
 
    0.482
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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