STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gltACitrate synthase; Belongs to the citrate synthase family. (457 aa)    
Predicted Functional Partners:
acn
Putative aconitate hydratase; Protein synonym:aconitase.
 
 0.998
acoC
Acetoin dehydrogenase E2 component; Protein synonym:dihydrolipoamide acetyltransferase.
  
 0.982
pdhC
Dihydrolipoamide acetyltransferase; Protein synonym:pyruvate dehydrogenase E2 component.
  
 0.982
OBV_28860
Pyruvate-ferredoxin (flavodoxin) oxidoreductase.
  
 
 0.958
icd
NADP-dependent isocitrate dehydrogenase; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
  
 
 0.958
OBV_01090
Pyruvate-ferredoxin (flavodoxin) oxidoreductase.
  
 
 0.956
acoL
Acetoin dehydrogenase E3 component; Protein synonym:dihydrolipoyl dehydrogenase.
  
 0.956
OBV_35340
Pyruvate-ferredoxin (flavodoxin) oxidoreductase.
  
 
 0.956
OBV_45490
Pyruvate-ferredoxin (flavodoxin) oxidoreductase.
  
 
 0.956
fumC
Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
  
 0.951
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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