STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OBV_32060Putative acetyltransferase. (254 aa)    
Predicted Functional Partners:
OBV_32040
Hypothetical protein.
       0.779
OBV_32050
Putative acetyltransferase.
  
  
 0.777
OBV_32070
Hypothetical protein.
       0.773
OBV_32080
Hypothetical protein.
       0.655
OBV_12160
Hypothetical protein.
  
   
 0.560
OBV_32760
Hypothetical protein.
  
     0.449
OBV_41250
Hypothetical protein.
 
    0.426
OBV_15170
Major facilitator superfamily transporter.
  
     0.418
argG
Argininosuccinate synthase; Protein synonym:citrulline--aspartate ligase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
  
 0.414
OBV_10150
Hypothetical protein.
  
     0.406
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.