STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBV_34320Putative surface layer protein. (417 aa)    
Predicted Functional Partners:
prkC
Serine/threonine protein kinase PrkC.
   
 
 0.892
OBV_34340
Hypothetical protein.
    
  0.861
OBV_29010
Putative surface layer protein.
 
  
 0.830
OBV_34190
Hypothetical protein.
  
 
 0.811
OBV_10750
Hypothetical protein.
 
  
 0.799
OBV_34330
Hypothetical protein.
       0.773
OBV_26010
Putative surface layer protein.
  
    0.764
OBV_34300
Hypothetical protein.
       0.760
OBV_34310
Putative cell division protein FtsK.
       0.760
OBV_28700
Hypothetical protein.
  
     0.758
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.