STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abfD-5Gamma-aminobutyrate metabolism dehydratase/isomerase; Bifunctional protein. (491 aa)    
Predicted Functional Partners:
OBV_01030
Putative CoA-transferase.
    
 0.964
OBV_23410
acetyl-CoA hydrolase/transferase family protein.
    
 0.964
OBV_40160
CoA-transferase.
    
 0.964
crt
3-hydroxybutyryl-CoA dehydratase; Protein synonym:crotonase; Belongs to the enoyl-CoA hydratase/isomerase family.
    
 0.905
OBV_24180
Putative enoyl-CoA hydratase.
    
 0.905
crt-3
3-hydroxybutyryl-CoA dehydratase; Protein synonym:crotonase; Belongs to the enoyl-CoA hydratase/isomerase family.
    
 0.905
crt-2
3-hydroxybutyryl-CoA dehydratase; Protein synonym:crotonase; Belongs to the enoyl-CoA hydratase/isomerase family.
    
 0.904
acdA
acyl-CoA dehydrogenase.
    
 0.903
acdA-2
acyl-CoA dehydrogenase.
    
 0.903
abfD
Gamma-aminobutyrate metabolism dehydratase/isomerase; Bifunctional protein.
  
  
 
0.900
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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