STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBV_35480Hypothetical protein. (273 aa)    
Predicted Functional Partners:
OBV_35510
Putative aldehyde dehydrogenase.
 
  
 0.841
OBV_05480
Putative oxidoreductase.
  
  
 0.824
ilvB-2
Acetolactate synthase large subunit; Protein synonym:acetohydroxy-acid synthase; Belongs to the TPP enzyme family.
 
     0.812
OBV_15880
Putative aldehyde dehydrogenase.
 
  
 0.794
ilvB
Acetolactate synthase large subunit; Protein synonym:acetohydroxy-acid synthase; Belongs to the TPP enzyme family.
 
     0.777
OBV_35470
Putative LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.588
mvaB
Protein synonym:3-hydroxy-3-methylglutarate-CoA lyase.
 
     0.564
aroE
Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
 
  
 0.546
OBV_12250
Hypothetical protein.
  
     0.497
fba
Fructose-bisphosphate aldolase.
  
  
 0.478
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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