STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ktrB-2Ktr system potassium uptake protein KtrB. (446 aa)    
Predicted Functional Partners:
ktrA-2
Ktr system potassium uptake protein KtrA.
 
 0.985
ktrA
Ktr system potassium uptake protein KtrA.
 
 
 0.956
OBV_36720
Hypothetical protein.
       0.773
trkA
Trk system potassium uptake protein TrkA.
  
 
 0.754
OBV_36690
Putative two-component histidine kinase.
     
 0.659
OBV_36680
OmpR family two-component response regulator.
     
 0.624
OBV_36730
Putative TetR family transcriptional regulator.
       0.430
OBV_36740
Putative efflux protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.430
OBV_36750
Putative transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.430
OBV_23210
rRNA methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.414
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.