Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OBV_36780Hypothetical protein. (503 aa)    
Predicted Functional Partners:
OBV_36790
Hypothetical protein.
    0.982
OBV_36800
Hypothetical protein.
 
    0.949
OBV_36770
Hypothetical protein.
       0.658
OBV_29580
Hypothetical protein.
  
 
 0.621
OBV_00460
Hypothetical protein.
  
     0.575
OBV_36830
ABC transporter ATP-binding protein.
  
    0.546
OBV_20220
Hypothetical protein.
  
     0.545
OBV_36820
Putative GntR family transcriptional regulator.
  
    0.541
OBV_00470
Hypothetical protein.
  
     0.536
OBV_36810
Hypothetical protein.
       0.536
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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