Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OBV_37460Hypothetical protein. (361 aa)    
Predicted Functional Partners:
OBV_10590
Hypothetical protein.
 
  
 0.917
OBV_01150
Hypothetical protein.
  
 0.916
OBV_07380
Hypothetical protein.
 
 
 0.879
OBV_15040
Hypothetical protein.
 
 0.879
OBV_07310
Hypothetical protein.
  
 0.841
OBV_01170
Hypothetical protein.
 
 
 0.753
OBV_16010
Hypothetical protein.
 
 0.751
OBV_41250
Hypothetical protein.
 
  
0.609
OBV_12510
Phosphoribosylaminoimidazole carboxylase.
 
      0.595
OBV_11280
Hypothetical protein.
 
 
0.592
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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