STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBV_37980Putative GntR family transcriptional regulator. (227 aa)    
Predicted Functional Partners:
OBV_35350
Putative GntR family transcriptional regulator.
 
  
 0.730
OBV_06560
Putative GntR family transcriptional regulator.
  
    0.557
OBV_37990
Hypothetical protein.
       0.492
OBV_37290
Putative LacI family transcriptional regulator.
  
 
 
 0.485
OBV_28030
Putative Xre family DNA-binding protein.
 
  
 0.465
vorD
Putative ketoisovalerate oxidoreductase subunit VorD; Fragment.
       0.437
kdgR
Transcriptional regulator KdgR.
  
 
 
 0.417
OBV_33680
Putative transporter; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
 
  
 0.408
rbsR
Ribose operon repressor.
  
 
 
 0.407
vorA
Putative ketoisovalerate oxidoreductase subunit VorA; Protein synonym:2-oxoisovalerate ferredoxin reductase subunit alpha; protein synonym:2-oxoisovalerate oxidoreductase alpha chain.
       0.407
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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