STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBV_41280Putative LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (314 aa)    
Predicted Functional Partners:
OBV_08500
Putative LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.773
OBV_01140
Putative LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.748
OBV_41270
Hypothetical protein.
  
    0.692
OBV_33650
Putative LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.604
OBV_41290
Citrate transporter family protein.
 
     0.543
OBV_41310
Aldolase.
 
     0.521
OBV_41260
Putative site-specific recombinase; Belongs to the 'phage' integrase family.
       0.509
gltB
Glutamate synthase large subunit; Protein synonym:GLTS alpha chain; protein synonym:NADPH-GOGAT; protein synonym:glutamate synthase [NADPH] alpha subunit.
  
  
 0.466
OBV_41300
Oxidoreductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.425
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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