Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OBV_41580Putative terminase large subunit. (506 aa)    
Predicted Functional Partners:
OBV_41680
Hypothetical protein.
 
  
 0.862
OBV_19960
Hypothetical protein.
 
  
 0.856
OBV_41620
Hypothetical protein.
 
    0.856
OBV_41550
Putative portal protein.
 
   
 0.839
OBV_41530
Putative capsid protein.
 
     0.825
OBV_41540
Putative prohead protease; Belongs to the peptidase S14 family.
 
     0.812
OBV_20020
Putative portal protein.
 
   
 0.801
OBV_27420
Putative portal protein.
 
   
 0.801
OBV_41640
Putative methyltransferase; Belongs to the N(4)/N(6)-methyltransferase family.
 
     0.795
OBV_41670
Hypothetical protein.
 
     0.782
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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