STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBV_43830Hypothetical protein. (581 aa)    
Predicted Functional Partners:
pdxA-2
4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
 
     0.879
OBV_24230
Putative TyrR family transcriptional regulator.
  
     0.772
rpoN
RNA polymerase sigma factor RpoN; Protein synonym:sigma54.
 
   
 0.766
OBV_34550
Hypothetical protein.
 
     0.757
pdxA
4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
 
     0.740
OBV_34470
Hypothetical protein.
  
     0.653
OBV_43820
Hypothetical protein.
       0.571
OBV_32960
Putative AraC family transcriptional regulator.
  
     0.491
OBV_41290
Citrate transporter family protein.
 
    0.435
OBV_08510
Citrate transporter family protein.
 
    0.411
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.