Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
OBV_44510Putative Xre family DNA-binding protein. (107 aa)    
Predicted Functional Partners:
OBV_32890
Putative Xre family DNA-binding protein.
  
     0.773
OBV_02380
Hypothetical protein.
  
     0.668
OBV_18090
Hypothetical protein.
  
    0.514
OBV_44500
Putative UvrABC system protein A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
       0.505
OBV_44490
Major facilitator superfamily transporter.
       0.498
OBV_18050
Hypothetical protein.
  
     0.470
OBV_05690
Hypothetical protein.
     
 0.415
OBV_19150
Endoribonuclease; Toxic component of a type II toxin-antitoxin (TA) system.
    
 0.413
OBV_44440
Endoribonuclease; Toxic component of a type II toxin-antitoxin (TA) system.
    
 0.413
OBV_05210
AbrB family transcriptional regulator.
     
  0.410
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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