Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
OBV_44720Putative Xre family DNA-binding protein. (71 aa)    
Predicted Functional Partners:
OBV_44730
Hypothetical protein.
       0.773
OBV_44710
Hypothetical protein.
       0.539
OBV_44700
Hypothetical protein.
  
    0.511
OBV_44690
Hypothetical protein.
       0.461
OBV_05690
Hypothetical protein.
     
 0.415
OBV_19150
Endoribonuclease; Toxic component of a type II toxin-antitoxin (TA) system.
    
 0.413
OBV_44440
Endoribonuclease; Toxic component of a type II toxin-antitoxin (TA) system.
    
 0.413
OBV_05210
AbrB family transcriptional regulator.
     
  0.410
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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