STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBV_45360Putative GntR family transcriptional regulator. (128 aa)    
Predicted Functional Partners:
OBV_45370
Putative ABC transporter ATP-binding protein.
 
  
 0.977
OBV_45380
Hypothetical protein.
 
  
 0.973
OBV_46060
Putative ABC transporter ATP-binding protein.
 
  
 0.654
OBV_36830
ABC transporter ATP-binding protein.
 
  
 0.593
OBV_13430
Putative ABC transporter ATP-binding protein.
 
  
 0.586
OBV_45390
Hypothetical protein.
       0.574
flhO
Flagellar hook-basal body complex protein FlhO.
   
    0.553
OBV_45350
Hypothetical protein.
       0.448
holB
Putative DNA polymerase III subunit delta'.
 
     0.428
OBV_00490
Putative ABC transporter ATP-binding protein.
  
  
 0.426
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.