STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADV42139.1Secretion protein HlyD family protein; COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: bfs:BF3760 hypothetical protein; PFAM: secretion protein HlyD family protein; SPTR: Putative uncharacterized protein; PFAM: HlyD family secretion protein. (328 aa)    
Predicted Functional Partners:
ADV42141.1
ABC-2 type transporter; COGs: COG0842 ABC-type multidrug transport system permease component; InterPro IPR013525; KEGG: bfr:BF3987 hypothetical protein; PFAM: ABC-2 type transporter; SPTR: Putative uncharacterized protein; PFAM: ABC-2 type transporter.
 
  
 0.951
ADV42140.1
ABC-2 type transporter; InterPro IPR000209: IPR013525; KEGG: bfs:BF3761 putative transport-related membrane protein; PFAM: ABC-2 type transporter; SPTR: Putative uncharacterized protein; PFAM: ABC-2 type transporter.
 
  
 0.950
ADV42138.1
COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: bfs:BF3759 putative outer membrane protein; PFAM: outer membrane efflux protein; SPTR: Putative uncharacterized protein; PFAM: Outer membrane efflux protein.
 
 
 0.927
ADV43361.1
COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: bfr:BF3150 putative outer membrane protein TolC; PFAM: outer membrane efflux protein; SPTR: Putative uncharacterized protein; PFAM: Outer membrane efflux protein.
 
 
 0.704
ADV42593.1
RND efflux system, outer membrane lipoprotein, NodT family; COGs: COG1538 Outer membrane protein; InterPro IPR010131: IPR003423; KEGG: bth:BT_3337 outer membrane protein OprM precursor, multidrug resistance protein; PFAM: outer membrane efflux protein; SPTR: Putative uncharacterized protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
 
 
 0.699
ADV44655.1
COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: bfs:BF1936 putative outer membrane lipoprotein precursor; PFAM: outer membrane efflux protein; SPTR: Putative uncharacterized protein; PFAM: Outer membrane efflux protein; TIGRFAM: type I secretion outer membrane protein, TolC family.
 
 
 0.692
ADV42762.1
RND efflux system, outer membrane lipoprotein, NodT family; COGs: COG1538 Outer membrane protein; InterPro IPR003423: IPR010131; KEGG: bth:BT_2942 putative multidrug resistance protein; PFAM: outer membrane efflux protein; SPTR: Putative uncharacterized protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
 
 
 0.687
ADV44918.1
COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: bth:BT_1530 putative outer membrane protein OprM precursor; PFAM: outer membrane efflux protein; SPTR: Putative uncharacterized protein; PFAM: Outer membrane efflux protein.
 
 
 0.680
ADV42289.1
COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: bfr:BF0557 putative outer membrane efflux protein; PFAM: outer membrane efflux protein; SPTR: Putative uncharacterized protein; PFAM: Outer membrane efflux protein.
 
 
 0.664
ADV43106.1
COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: bth:BT_2688 outer membrane efflux protein; PFAM: outer membrane efflux protein; SPTR: Putative uncharacterized protein; PFAM: Outer membrane efflux protein.
  
 
 0.633
Your Current Organism:
Bacteroides helcogenes
NCBI taxonomy Id: 693979
Other names: B. helcogenes P 36-108, Bacteroides helcogenes DSM 20613, Bacteroides helcogenes P 36-108, Bacteroides helcogenes str. P 36-108, Bacteroides helcogenes strain P 36-108
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