Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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ADV42230.1Protein of unknown function DUF140; COGs: COG0767 ABC-type transport system involved in resistance to organic solvents permease component; InterPro IPR006162: IPR003453; KEGG: bfs:BF3899 hypothetical protein; PFAM: protein of unknown function DUF140; SPTR: Putative uncharacterized protein; manually curated; PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein. (247 aa)    
Predicted Functional Partners:
ADV42231.1
ABC transporter related protein; COGs: COG1127 ABC-type transport system involved in resistance to organic solvents ATPase component; InterPro IPR003439: IPR003593: IPR017871; KEGG: bth:BT_3839 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Putative uncharacterized protein; PFAM: ABC transporter.
 
 0.999
ADV45274.1
Mammalian cell entry related domain protein; COGs: COG1463 ABC-type transport system involved in resistance to organic solvents periplasmic component; InterPro IPR003399; KEGG: bfs:BF3616 hypothetical protein; PFAM: Mammalian cell entry related domain protein; SPTR: Putative uncharacterized protein; PFAM: mce related protein.
 
 0.991
ADV42229.1
ABC transporter related protein; COGs: COG1137 ABC-type (unclassified) transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: bfs:BF3898 putative ABC transport system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Putative uncharacterized protein; PFAM: ABC transporter.
 
  
  0.871
ADV44292.1
Permease YjgP/YjgQ family protein; COGs: COG0795 permease; InterPro IPR005495; KEGG: bth:BT_0834 hypothetical protein; PFAM: permease YjgP/YjgQ family protein; SPTR: Putative uncharacterized protein; PFAM: Predicted permease YjgP/YjgQ family.
 
 
 0.660
ADV42246.1
Permease YjgP/YjgQ family protein; COGs: COG0795 permease; InterPro IPR005495; KEGG: bfs:BF0543 putative permease; PFAM: permease YjgP/YjgQ family protein; SPTR: Putative uncharacterized protein; manually curated; PFAM: Predicted permease YjgP/YjgQ family.
 
 
 0.537
ADV43264.1
lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
  
  
 0.537
ADV42352.1
COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR016474: IPR010827: IPR000184; KEGG: bfs:BF0449 putative outer membrane protein; PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein; SPTR: Outer membrane protein assembly complex, YaeT protein; TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: Surface antigen variable number repeat; TIGRFAM: outer membrane protein assembly complex, YaeT protein.
 
     0.511
ADV43389.1
acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
    0.462
ADV42119.1
Outer membrane transport energization protein ExbB; COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: bfs:BF3739 putative transport related membrane protein; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Putative uncharacterized protein; PFAM: MotA/TolQ/ExbB proton channel family; TC 2.C.1.1.1.
  
     0.460
lpxD
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.
 
     0.457
Your Current Organism:
Bacteroides helcogenes
NCBI taxonomy Id: 693979
Other names: B. helcogenes P 36-108, Bacteroides helcogenes DSM 20613, Bacteroides helcogenes P 36-108, Bacteroides helcogenes str. P 36-108, Bacteroides helcogenes strain P 36-108
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