STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADV42354.1Outer membrane chaperone Skp (OmpH); InterPro IPR005632; KEGG: bfs:BF0447 putative outer membrane protein; PFAM: outer membrane chaperone Skp (OmpH); SPTR: Putative uncharacterized protein; PFAM: Outer membrane protein (OmpH-like). (168 aa)    
Predicted Functional Partners:
ADV42352.1
COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR016474: IPR010827: IPR000184; KEGG: bfs:BF0449 putative outer membrane protein; PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein; SPTR: Outer membrane protein assembly complex, YaeT protein; TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: Surface antigen variable number repeat; TIGRFAM: outer membrane protein assembly complex, YaeT protein.
 
  
 0.862
ADV42353.1
Outer membrane chaperone Skp (OmpH); COGs: COG2825 Outer membrane protein; InterPro IPR005632; KEGG: bfs:BF0448 putative cationic 19 kDa outer membrane protein precursor; PFAM: outer membrane chaperone Skp (OmpH); SPTR: Putative uncharacterized protein; PFAM: Outer membrane protein (OmpH-like).
 
     0.819
ADV44311.1
Surface antigen (D15); COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR000184: IPR005829; KEGG: bfr:BF2282 putative outer membrane protein; PFAM: surface antigen (D15); SPTR: Putative uncharacterized protein; PFAM: Surface antigen.
 
  
 0.749
ADV43538.1
KEGG: bfs:BF0990 putative outer membrane protein; SPTR: Putative uncharacterized protein.
  
     0.747
ADV42350.1
KEGG: bfs:BF0451 hypothetical protein; SPTR: Putative uncharacterized protein.
 
  
 0.723
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
       0.714
ADV44819.1
KEGG: bfs:BF1644 hypothetical protein; SPTR: Putative hemin receptor; PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX).
  
     0.707
ADV43445.1
Hypothetical protein; InterPro IPR013026; KEGG: bth:BT_4254 hypothetical protein; SPTR: Putative uncharacterized protein.
  
  
 0.673
ADV43259.1
KEGG: bfs:BF0694 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.659
ADV42590.1
KEGG: bfs:BF0158 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3108).
  
     0.640
Your Current Organism:
Bacteroides helcogenes
NCBI taxonomy Id: 693979
Other names: B. helcogenes P 36-108, Bacteroides helcogenes DSM 20613, Bacteroides helcogenes P 36-108, Bacteroides helcogenes str. P 36-108, Bacteroides helcogenes strain P 36-108
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.