STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADV42388.1LrgA family protein; COGs: COG1380 Putative effector of murein hydrolase LrgA; InterPro IPR005538; KEGG: bfs:BF0418 putative transmembrane holin-like protein LrgA; PFAM: LrgA family protein; SPTR: Putative uncharacterized protein; PFAM: LrgA family. (112 aa)    
Predicted Functional Partners:
ADV42389.1
LrgB family protein; COGs: COG1346 Putative effector of murein hydrolase; InterPro IPR007300; KEGG: bfs:BF0417 LrgB family transmembrane protein; PFAM: LrgB family protein; SPTR: Putative uncharacterized protein; PFAM: LrgB-like family; TIGRFAM: conserved hypothetical protein TIGR00659.
 
  
 0.992
ADV42390.1
COGs: COG4866 conserved hypothetical protein; InterPro IPR016732; KEGG: bth:BT_3689 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2156).
       0.757
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
     
 0.476
ADV42392.1
GCN5-related N-acetyltransferase; COGs: COG4552 acetyltransferase involved in intracellular survival and related acetyltransferase; InterPro IPR000182; KEGG: bth:BT_3688 putative acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Putative uncharacterized protein.
       0.430
ADV42383.1
COGs: COG0280 Phosphotransacetylase; InterPro IPR004614: IPR012147: IPR002505; KEGG: bfs:BF0423 putative phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; PRIAM: Phosphate acetyltransferase; SPTR: Phosphate acetyltransferase; TIGRFAM: phosphate acetyltransferase; PFAM: Phosphate acetyl/butaryl transferase; TIGRFAM: phosphate acetyltransferase.
  
  
 0.404
Your Current Organism:
Bacteroides helcogenes
NCBI taxonomy Id: 693979
Other names: B. helcogenes P 36-108, Bacteroides helcogenes DSM 20613, Bacteroides helcogenes P 36-108, Bacteroides helcogenes str. P 36-108, Bacteroides helcogenes strain P 36-108
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.