STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADV42552.1KEGG: bth:BT_3397 hypothetical protein; SPTR: Putative uncharacterized protein. (160 aa)    
Predicted Functional Partners:
ADV42553.1
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR007627: IPR013249; KEGG: bfs:BF0198 putative extracytoplasmic function alternative sigma factor; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: Putative uncharacterized protein; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.906
efp
Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
 0.798
ADV43542.1
KEGG: bfr:BF1077 peptidyl-prolyl cis-trans isomerase; SPTR: Putative uncharacterized protein.
 
   0.772
ADV42072.1
KEGG: bfs:BF3669 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.763
ADV42801.1
KEGG: bfs:BF0095 putative transmembrane protein; SPTR: Putative uncharacterized protein.
  
     0.762
ADV44868.1
KEGG: bfs:BF3008 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.760
ADV42781.1
KEGG: bfs:BF0074 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.758
ADV42438.1
KEGG: bth:BT_3578 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3316).
  
     0.755
ADV43461.1
KEGG: bfs:BF0922 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.750
argB
N-acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
       0.749
Your Current Organism:
Bacteroides helcogenes
NCBI taxonomy Id: 693979
Other names: B. helcogenes P 36-108, Bacteroides helcogenes DSM 20613, Bacteroides helcogenes P 36-108, Bacteroides helcogenes str. P 36-108, Bacteroides helcogenes strain P 36-108
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