STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADV42943.1Rhomboid family protein; COGs: COG0705 membrane protein; InterPro IPR002610; KEGG: bfs:BF4221 putative transmembrane rhomboid family protein; PFAM: Rhomboid family protein; SPTR: Putative uncharacterized protein; PFAM: Rhomboid family. (227 aa)    
Predicted Functional Partners:
ADV42942.1
Rhomboid family protein; COGs: COG0705 membrane protein; InterPro IPR002610; KEGG: bfs:BF4222 putative transmembrane rhomboid family protein; PFAM: Rhomboid family protein; SPTR: Putative uncharacterized protein; PFAM: Rhomboid family.
 
    
0.869
ADV42941.1
Endonuclease/exonuclease/phosphatase; InterPro IPR005135; KEGG: bfs:BF4223 hypothetical protein; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Putative uncharacterized protein; PFAM: Endonuclease/Exonuclease/phosphatase family.
       0.843
ADV42940.1
Peptidyl-dipeptidase Dcp; COGs: COG0339 Zn-dependent oligopeptidase; InterPro IPR001567; KEGG: bth:BT_2834 peptidyl-dipeptidase; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; PRIAM: Peptidyl-dipeptidase Dcp; SPTR: Putative uncharacterized protein; PFAM: Peptidase family M3.
  
  
 0.800
ADV43367.1
Band 7 protein; InterPro IPR001107; KEGG: bth:BT_4194 putative integral membrane protein; PFAM: band 7 protein; SMART: band 7 protein; SPTR: Putative uncharacterized protein; PFAM: SPFH domain / Band 7 family.
   
 0.744
ADV42944.1
Bacterial nucleoid protein Hbs; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
  
    0.693
secD
Protein translocase subunit secF;protein translocase subunit secD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
    0.686
tatA
Twin-arginine translocation protein, TatA/E family subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.569
ADV43449.1
COGs: COG0212 5-formyltetrahydrofolate cyclo-ligase; InterPro IPR002698; KEGG: bth:BT_4258 putative 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; SPTR: 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; manually curated; PFAM: 5-formyltetrahydrofolate cyclo-ligase family; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase.
  
    0.512
ADV42612.1
Signal peptidase I; InterPro IPR000223: IPR019758: IPR019759; KEGG: bth:BT_3319 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; SPTR: Putative uncharacterized protein; TIGRFAM: signal peptidase I; PFAM: Peptidase S26; Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type; Belongs to the peptidase S26 family.
 
  
 0.447
ADV42421.1
Metallophosphoesterase; COGs: COG1520 FOG: WD40-like repeat; InterPro IPR018391: IPR003961: IPR004843: IPR002372; KEGG: bfr:BF0436 xanthan lyase; PFAM: metallophosphoesterase; Fibronectin type III domain protein; Pyrrolo-quinoline quinone repeat-containing protein; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; SPTR: Putative uncharacterized protein; PFAM: Calcineurin-like phosphoesterase; PQQ enzyme repeat.
  
   0.435
Your Current Organism:
Bacteroides helcogenes
NCBI taxonomy Id: 693979
Other names: B. helcogenes P 36-108, Bacteroides helcogenes DSM 20613, Bacteroides helcogenes P 36-108, Bacteroides helcogenes str. P 36-108, Bacteroides helcogenes strain P 36-108
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