STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADV42955.1COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease; InterPro IPR013520: IPR006055; KEGG: bvu:BVU_3037 putative exonuclease/DNA polymerase III epsilon C; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; SPTR: Putative uncharacterized protein; PFAM: Exonuclease. (165 aa)    
Predicted Functional Partners:
ADV43866.1
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 0.962
ADV43229.1
COGs: COG0587 DNA polymerase III alpha subunit; InterProIPR004013: IPR011708: IPR004365: IPR003141: IPR 004805; KEGG: bfs:BF0641 putative DNA polymerase III alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; PRIAM: DNA-directed DNA polymerase; SMART: phosphoesterase PHP domain protein; SPTR: Putative uncharacterized protein; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain; Bacterial DNA polymerase III alpha subunit; TIGRFAM: DNA-directed DNA polymerase III (polc).
   
 0.961
dnaX
DNA polymerase III, tau subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
   
 0.948
ADV43163.1
COGs: COG2812 DNA polymerase III gamma/tau subunits; KEGG: bth:BT_3820 putative DNA polymerase III, delta subunit; SPTR: Putative uncharacterized protein; TIGRFAM: DNA polymerase III, delta' subunit.
   
 0.948
ADV44270.1
COGs: COG1466 DNA polymerase III delta subunit; InterPro IPR010372: IPR005790; KEGG: bfs:BF2480 hypothetical protein; PFAM: DNA polymerase III delta; SPTR: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit.
    
 0.946
ADV43867.1
COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease; InterPro IPR006055: IPR013520; KEGG: bfs:BF2856 putative DNA polymerase III epsilon chain; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; SPTR: Putative uncharacterized protein; PFAM: Exonuclease.
  
  
  0.924
ADV42956.1
Inositol monophosphatase; COGs: COG0483 fructose-1 6-bisphosphatase of inositol monophosphatase family; InterPro IPR000760: IPR020583; KEGG: bfs:BF4187 putative inositol-1-monophosphatase; PFAM: inositol monophosphatase; SPTR: Putative uncharacterized protein; PFAM: Inositol monophosphatase family.
  
  
 0.786
ADV42957.1
COGs: COG1040 amidophosphoribosyltransferase; InterPro IPR000836: IPR016160; KEGG: bth:BT_2800 putative amidophosphoribosyl-transferase; PFAM: phosphoribosyltransferase; SPTR: Putative uncharacterized protein; manually curated; PFAM: Phosphoribosyl transferase domain; TIGRFAM: comF family protein.
       0.732
ADV43030.1
DEAD/DEAH box helicase domain protein; COGs: COG0514 Superfamily II DNA helicase; InterPro IPR014021: IPR001650: IPR011545: IPR014001; KEGG: bvu:BVU_2638 ATP-dependent DNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: Putative uncharacterized protein; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase.
  
 
 0.462
rpmD
COGs: COG1841 Ribosomal protein L30/L7E; InterPro IPR000517: IPR005996; KEGG: bfs:BF3985 50S ribosomal protein L30; PFAM: ribosomal protein L30; SPTR: 50S ribosomal protein L30; TIGRFAM: ribosomal protein L30; PFAM: Ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle.
   
 0.452
Your Current Organism:
Bacteroides helcogenes
NCBI taxonomy Id: 693979
Other names: B. helcogenes P 36-108, Bacteroides helcogenes DSM 20613, Bacteroides helcogenes P 36-108, Bacteroides helcogenes str. P 36-108, Bacteroides helcogenes strain P 36-108
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