STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADV43396.1Putative transcriptional regulator, Crp/Fnr family; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: bfs:BF0313 putative cAMP-binding DNA-binding protein; PFAM: cyclic nucleotide-binding; SPTR: Putative regulatory protein; PFAM: Cyclic nucleotide-binding domain. (187 aa)    
Predicted Functional Partners:
ADV43399.1
Putative ferredoxin-type protein; COGs: COG0348 Polyferredoxin; InterPro IPR017896: IPR017900; KEGG: bth:BT_0963 putative ferredoxin-type protein; SPTR: Putative uncharacterized protein; PFAM: 4Fe-4S binding domain.
  
  
 0.636
ADV43395.1
COGs: COG1835 acyltransferase; InterPro IPR002656; KEGG: bth:BT_2367 acyltransferase; PFAM: acyltransferase 3; SPTR: Putative uncharacterized protein; PFAM: Acyltransferase family.
 
     0.615
ADV43397.1
KEGG: bth:BT_0959 hypothetical protein; SPTR: Putative transmembrane protein.
       0.581
ADV42749.1
KEGG: bth:BT_1786 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.555
ADV43603.1
COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006145: IPR006224; KEGG: bfr:BF1141 ribosomal large subunit pseudouridine synthase A; PFAM: pseudouridine synthase; SPTR: Pseudouridine synthase; PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family.
  
     0.547
ADV44106.1
KEGG: bth:BT_0574 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: RNA polymerase Rpb6.
  
 
 
 0.522
ADV43292.1
COGs: COG4585 Signal transduction histidine kinase; InterProIPR013026: IPR000169: IPR001440: IPR003594: IPR 019734; KEGG: bfr:BF0900 hypothetical protein; PFAM: ATP-binding region ATPase domain protein; Tetratricopeptide TPR_1 repeat-containing protein; SPTR: Putative uncharacterized protein; PFAM: Histidine kinase.
   
 
 0.521
ADV43398.1
COGs: COG1453 oxidoreductase of the aldo/keto reductase family; InterProIPR017909: IPR017896: IPR006311: IPR017900: IPR 001395; KEGG: bth:BT_0962 aldo/keto reductase; PFAM: aldo/keto reductase; SPTR: Putative uncharacterized protein; PFAM: Aldo/keto reductase family; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
       0.515
ADV44971.1
KEGG: bfr:BF0258 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 
 
 0.512
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.482
Your Current Organism:
Bacteroides helcogenes
NCBI taxonomy Id: 693979
Other names: B. helcogenes P 36-108, Bacteroides helcogenes DSM 20613, Bacteroides helcogenes P 36-108, Bacteroides helcogenes str. P 36-108, Bacteroides helcogenes strain P 36-108
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.