STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADV43441.1COGs: COG1956 GAF domain-containing protein; InterPro IPR003018; KEGG: bfr:BF1809 GAF domain-containing protein; PFAM: GAF domain protein; SPTR: Putative uncharacterized protein; PFAM: GAF domain. (165 aa)    
Predicted Functional Partners:
metK
Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
     
  0.900
ADV44941.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
  0.900
ADV43442.1
KEGG: bfs:BF0849 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3256).
       0.773
ADV43438.1
InterPro IPR000620; KEGG: bfr:BF0926 putative permease; PFAM: protein of unknown function DUF6 transmembrane; SPTR: Putative uncharacterized protein; PFAM: EamA-like transporter family.
       0.547
ADV43440.1
KEGG: bfs:BF2105 hypothetical protein; SPTR: Putative uncharacterized protein.
     
 0.516
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
       0.515
mnmE
tRNA modification GTPase trmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
       0.430
ADV43651.1
COGs: COG2820 Uridine phosphorylase; InterPro IPR000845; KEGG: bfr:BF1175 purine nucleoside phosphorylase II; PFAM: purine or other phosphorylase family 1; SPTR: Purine nucleoside phosphorylase II; PFAM: Phosphorylase superfamily.
       0.430
ADV43652.1
Band 7 protein; COGs: COG4864 conserved hypothetical protein; InterPro IPR001107; KEGG: bfs:BF1143 hypothetical protein; PFAM: band 7 protein; SPTR: Putative uncharacterized protein; PFAM: SigmaW regulon antibacterial.
       0.430
ADV44705.1
5'-Nucleotidase domain-containing protein; COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase; InterPro IPR004843: IPR008334: IPR006179; KEGG: bfs:BF1873 putative 2', 3'-cyclic nucleotide 2'-phosphodiesterase; PFAM: 5'-Nucleotidase domain-containing protein; metallophosphoesterase; SPTR: Putative uncharacterized protein; PFAM: 5'-nucleotidase, C-terminal domain; Calcineurin-like phosphoesterase; Belongs to the 5'-nucleotidase family.
       0.430
Your Current Organism:
Bacteroides helcogenes
NCBI taxonomy Id: 693979
Other names: B. helcogenes P 36-108, Bacteroides helcogenes DSM 20613, Bacteroides helcogenes P 36-108, Bacteroides helcogenes str. P 36-108, Bacteroides helcogenes strain P 36-108
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