STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADV43473.1HAD-superfamily hydrolase, subfamily IA, variant 1; COGs: COG0546 phosphatase; InterPro IPR006439: IPR005834; KEGG: bvu:BVU_3633 HPr(Ser) phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: Putative uncharacterized protein; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Protein of unknown function (DUF3667); haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. (670 aa)    
Predicted Functional Partners:
ADV45042.1
COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterProIPR011895: IPR017900: IPR002880: IPR019752: IPR 019456: IPR011766: IPR017896; KEGG: bth:BT_1747 pyruvate-flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; Pyruvate-flavodoxin oxidoreductase, EKR domain; thiamine pyrophosphate TPP-binding domain-containing protein; SPTR: Pyruvate:ferredoxin (Flavodoxin) oxidoreductase; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidored [...]
     
 0.563
ADV43474.1
Alpha-1,2-mannosidase; COGs: COG3537 Putative alpha-1 2-mannosidase; InterPro IPR005887: IPR012939; KEGG: bvu:BVU_0628 glycoside hydrolase family protein; PFAM: glycosyl hydrolase 92; SPTR: Putative alpha-1,2-mannosidase; TIGRFAM: alpha-1,2-mannosidase; PFAM: Glycosyl hydrolase family 92; TIGRFAM: alpha-1,2-mannosidase, putative.
       0.550
rplU
LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
    0.537
ADV43494.1
KEGG: bth:BT_4319 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.532
rpmA
COGs: COG0211 Ribosomal protein L27; InterPro IPR001684: IPR018261; KEGG: bfs:BF0929 50S ribosomal protein L27; PFAM: ribosomal protein L27; SPTR: 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
  
    0.504
ADV43491.1
GumN family protein; COGs: COG3735 conserved hypothetical protein; InterPro IPR010891; KEGG: bth:BT_4316 hypothetical protein; PFAM: GumN family protein; SPTR: Putative uncharacterized protein; PFAM: GumN protein.
 
    0.489
ADV43827.1
KEGG: bfr:BF2098 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.485
ADV43475.1
Alpha-1,2-mannosidase; COGs: COG3537 Putative alpha-1 2-mannosidase; InterPro IPR005887: IPR012939; KEGG: bvu:BVU_0625 glycoside hydrolase family protein; PFAM: glycosyl hydrolase 92; SPTR: Glycoside hydrolase family 92; TIGRFAM: alpha-1,2-mannosidase; PFAM: Glycosyl hydrolase family 92; TIGRFAM: alpha-1,2-mannosidase, putative.
       0.460
ADV43493.1
ABC transporter related protein; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: bfs:BF0933 putative ATP-binding component of ABC transporter protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Putative uncharacterized protein; PFAM: ABC transporter.
     
 0.446
ADV43492.1
NLP/P60 protein; COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR000064; KEGG: bfs:BF0932 putative lipoprotein; PFAM: NLP/P60 protein; SPTR: Putative uncharacterized protein; PFAM: NlpC/P60 family.
  
    0.435
Your Current Organism:
Bacteroides helcogenes
NCBI taxonomy Id: 693979
Other names: B. helcogenes P 36-108, Bacteroides helcogenes DSM 20613, Bacteroides helcogenes P 36-108, Bacteroides helcogenes str. P 36-108, Bacteroides helcogenes strain P 36-108
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