STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADV43575.1Transcriptional regulator; KEGG: bvu:BVU_0461 hypothetical protein; SPTR: Putative uncharacterized protein. (94 aa)    
Predicted Functional Partners:
ADV43573.1
KEGG: pdi:BDI_1981 hypothetical protein; SPTR: Putative uncharacterized protein.
 
    0.960
ADV43574.1
KEGG: kcr:Kcr_0473 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.853
ADV43572.1
KEGG: bth:BT_1571 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2141).
       0.637
ADV43576.1
COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: fjo:Fjoh_0564 alpha/beta hydrolase fold; PFAM: alpha/beta hydrolase fold; SPTR: Putative uncharacterized protein; PFAM: alpha/beta hydrolase fold.
     
 0.601
ADV43577.1
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR007627: IPR013249; KEGG: fjo:Fjoh_0563 ECF subfamily RNA polymerase sigma-24 factor; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: Putative uncharacterized protein; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; manually curated; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
  
  
 0.600
ADV43910.1
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; COGs: COG0446 NAD(FAD)-dependent dehydrogenase; InterPro IPR001763: IPR013027: IPR004099: IPR001455; KEGG: bvu:BVU_2422 pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; Rhodanese domain protein; SirA-like domain-containing protein; SMART: Rhodanese domain protein; SPTR: Putative uncharacterized protein; PFAM: Pyridine nucleotide-disulphide oxidoreductase; SirA-like protein; Rhodanese-like domain; [...]
  
  
 0.600
ADV43578.1
KEGG: fjo:Fjoh_0562 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.581
ADV43579.1
COGs: COG0775 Nucleoside phosphorylase; InterPro IPR000845; KEGG: bfs:BF3401 hypothetical protein; PFAM: purine or other phosphorylase family 1; SPTR: Putative uncharacterized protein; PFAM: Phosphorylase superfamily.
       0.483
Your Current Organism:
Bacteroides helcogenes
NCBI taxonomy Id: 693979
Other names: B. helcogenes P 36-108, Bacteroides helcogenes DSM 20613, Bacteroides helcogenes P 36-108, Bacteroides helcogenes str. P 36-108, Bacteroides helcogenes strain P 36-108
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