STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADV43655.1PP-loop domain protein; COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; InterPro IPR012089: IPR011063; KEGG: bfs:BF1146 hypothetical protein; PFAM: PP-loop domain protein; SPTR: Putative uncharacterized protein; PFAM: PP-loop family; Belongs to the TtcA family. (253 aa)    
Predicted Functional Partners:
ADV43656.1
Protein of unknown function DUF486; COGs: COG3169 conserved hypothetical protein; InterPro IPR007437; KEGG: bfs:BF1147 hypothetical protein; PFAM: protein of unknown function DUF486; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function, DUF486.
  
    0.859
ADV43654.1
WD40-like beta Propeller containing protein; InterPro IPR013026: IPR011659; KEGG: bfs:BF1145 hypothetical protein; PFAM: WD40-like beta Propeller containing protein; SPTR: Putative uncharacterized protein.
  
    0.719
ADV43653.1
Protein of unknown function DUF107; InterPro IPR002810; KEGG: bth:BT_4556 hypothetical protein; PFAM: protein of unknown function DUF107; SPTR: Putative uncharacterized protein; PFAM: NfeD-like.
       0.708
ADV43652.1
Band 7 protein; COGs: COG4864 conserved hypothetical protein; InterPro IPR001107; KEGG: bfs:BF1143 hypothetical protein; PFAM: band 7 protein; SPTR: Putative uncharacterized protein; PFAM: SigmaW regulon antibacterial.
       0.675
ADV43651.1
COGs: COG2820 Uridine phosphorylase; InterPro IPR000845; KEGG: bfr:BF1175 purine nucleoside phosphorylase II; PFAM: purine or other phosphorylase family 1; SPTR: Purine nucleoside phosphorylase II; PFAM: Phosphorylase superfamily.
       0.602
mnmE
tRNA modification GTPase trmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
 
   
 0.585
ADV44328.1
Sulfur carrier protein ThiS; InterPro IPR003749: IPR010035; KEGG: bfr:BF2528 ThiS protein involved in thiamine biosynthesis; PFAM: thiamineS protein; SPTR: Putative uncharacterized protein; TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: ThiS family; TIGRFAM: thiamine biosynthesis protein ThiS.
  
 
 0.540
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
   
 0.530
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
  
  
 0.528
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
  
  
 0.519
Your Current Organism:
Bacteroides helcogenes
NCBI taxonomy Id: 693979
Other names: B. helcogenes P 36-108, Bacteroides helcogenes DSM 20613, Bacteroides helcogenes P 36-108, Bacteroides helcogenes str. P 36-108, Bacteroides helcogenes strain P 36-108
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.