STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADV43798.1Tetracycline regulation of excision, RteC; InterPro IPR018534; KEGG: bfr:BF3844 hypothetical protein; PFAM: Tetracycline regulation of excision, RteC; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2589); RteC protein. (215 aa)    
Predicted Functional Partners:
ADV43768.1
KEGG: bth:BT_2332 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.764
ADV45105.1
KEGG: pdi:BDI_0746 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.763
ADV43627.1
Integrase family protein; InterPro IPR002104; KEGG: bvu:BVU_3179 integrase; PFAM: integrase family protein; SPTR: Predicted protein; PFAM: Phage integrase family; Belongs to the 'phage' integrase family.
  
     0.762
ADV44606.1
KEGG: pdi:BDI_0746 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.762
ADV43629.1
Hypothetical protein; KEGG: bfr:BF3455 tyrosine type site-specific recombinase; SPTR: Predicted protein.
  
     0.751
ADV43763.1
Integrase family protein; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: bvu:BVU_2470 putative transposase; PFAM: integrase family protein; SPTR: Putative uncharacterized protein; PFAM: Phage integrase family; Belongs to the 'phage' integrase family.
  
     0.742
ADV42212.1
KEGG: bfs:BF1793 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.741
ADV42214.1
Integrase family protein; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR016059: IPR002104; KEGG: bfs:BF1795 putative bacteriophage integrase; PFAM: integrase family protein; SPTR: Putative bacteriophage integrase; PFAM: Phage integrase family; Belongs to the 'phage' integrase family.
  
     0.741
ADV44607.1
KEGG: pdi:BDI_0745 hypothetical protein; SPTR: DNA binding domain, excisionase family protein; TIGRFAM: DNA binding domain, excisionase family.
 
     0.737
ADV43767.1
DNA binding domain protein, excisionase family; InterPro IPR010093; KEGG: bvu:BVU_2478 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: DNA binding domain protein, excisionase family; TIGRFAM: DNA binding domain, excisionase family.
  
     0.731
Your Current Organism:
Bacteroides helcogenes
NCBI taxonomy Id: 693979
Other names: B. helcogenes P 36-108, Bacteroides helcogenes DSM 20613, Bacteroides helcogenes P 36-108, Bacteroides helcogenes str. P 36-108, Bacteroides helcogenes strain P 36-108
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