STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADV43903.1NLP/P60 protein; COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR003646: IPR000064; KEGG: bfr:BF2747 dipeptidyl peptidase VI; PFAM: NLP/P60 protein; SMART: SH3 domain protein; SPTR: Putative uncharacterized protein; PFAM: NlpC/P60 family. (401 aa)    
Predicted Functional Partners:
ADV43904.1
Mandelate racemase/muconate lactonizing protein; COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013341: IPR013342: IPR006311: IPR017909; KEGG: bfr:BF2746 muconate cycloisomerase; PFAM: Mandelate racemase/muconate lactonizing protein; SPTR: Putative uncharacterized protein; PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
 
  
 0.900
ADV43905.1
COGs: COG1305 Transglutaminase-like protein; InterPro IPR002931; KEGG: bfr:BF2745 putative cysteine protease; PFAM: transglutaminase domain-containing protein; SMART: transglutaminase domain-containing protein; SPTR: Putative uncharacterized protein; PFAM: Transglutaminase-like superfamily.
 
    0.863
ADV43533.1
KEGG: bfr:BF1067 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 
   0.467
ADV42413.1
RagB/SusD domain protein; InterPro IPR012944; KEGG: phe:Phep_4138 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family.
  
   
 0.456
Your Current Organism:
Bacteroides helcogenes
NCBI taxonomy Id: 693979
Other names: B. helcogenes P 36-108, Bacteroides helcogenes DSM 20613, Bacteroides helcogenes P 36-108, Bacteroides helcogenes str. P 36-108, Bacteroides helcogenes strain P 36-108
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.