STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADV44105.1Outer membrane assembly lipoprotein YfiO; COGs: COG4105 DNA uptake lipoprotein; InterPro IPR011716: IPR017689: IPR019734: IPR013026; KEGG: bth:BT_0573 hypothetical protein; PFAM: Tetratricopeptide TPR_3 repeat-containing protein; SPTR: Putative uncharacterized protein; TIGRFAM: outer membrane assembly lipoprotein YfiO; TIGRFAM: outer membrane assembly lipoprotein YfiO. (267 aa)    
Predicted Functional Partners:
ADV44106.1
KEGG: bth:BT_0574 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: RNA polymerase Rpb6.
 
 
 
 0.934
ADV42352.1
COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR016474: IPR010827: IPR000184; KEGG: bfs:BF0449 putative outer membrane protein; PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein; SPTR: Outer membrane protein assembly complex, YaeT protein; TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: Surface antigen variable number repeat; TIGRFAM: outer membrane protein assembly complex, YaeT protein.
 
 
 0.910
ADV44311.1
Surface antigen (D15); COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR000184: IPR005829; KEGG: bfr:BF2282 putative outer membrane protein; PFAM: surface antigen (D15); SPTR: Putative uncharacterized protein; PFAM: Surface antigen.
 
 
 0.866
ADV44107.1
KEGG: bfs:BF2637 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.803
ADV42612.1
Signal peptidase I; InterPro IPR000223: IPR019758: IPR019759; KEGG: bth:BT_3319 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; SPTR: Putative uncharacterized protein; TIGRFAM: signal peptidase I; PFAM: Peptidase S26; Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type; Belongs to the peptidase S26 family.
 
  
 0.794
ADV42350.1
KEGG: bfs:BF0451 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 
 0.784
ADV45266.1
Hypothetical protein; COGs: COG1452 Organic solvent tolerance protein OstA; KEGG: bfs:BF3609 hypothetical protein; SPTR: Putative uncharacterized protein.
 
  
 0.774
ADV42791.1
KEGG: bth:BT_3247 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2723).
  
     0.766
ADV42246.1
Permease YjgP/YjgQ family protein; COGs: COG0795 permease; InterPro IPR005495; KEGG: bfs:BF0543 putative permease; PFAM: permease YjgP/YjgQ family protein; SPTR: Putative uncharacterized protein; manually curated; PFAM: Predicted permease YjgP/YjgQ family.
  
   
 0.752
ADV42220.1
InterPro IPR000297; KEGG: bth:BT_3848 peptidyl-prolyl cis-trans isomerase; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SPTR: Putative uncharacterized protein; PFAM: PPIC-type PPIASE domain.
  
  
 0.750
Your Current Organism:
Bacteroides helcogenes
NCBI taxonomy Id: 693979
Other names: B. helcogenes P 36-108, Bacteroides helcogenes DSM 20613, Bacteroides helcogenes P 36-108, Bacteroides helcogenes str. P 36-108, Bacteroides helcogenes strain P 36-108
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