STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADV44121.1Protein of unknown function DUF1141; InterPro IPR010570; KEGG: bfs:BF1894 putative LPS biosynthesis related transcriptional regulatory protein; PFAM: protein of unknown function DUF1141; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1141). (161 aa)    
Predicted Functional Partners:
ADV44120.1
NGN domain-containing protein; InterPro IPR006645; KEGG: bfs:BF1893 putative LPS biosynthesis related transcriptional regulatory protein; PFAM: NGN domain-containing protein; SPTR: Putative uncharacterized protein; PFAM: Transcription termination factor nusG.
  
    0.502
ADV44122.1
COGs: COG2089 Sialic acid synthase; InterPro IPR013132; KEGG: pca:Pcar_1277 sialic acid synthase; PFAM: N-acetylneuraminic acid synthase domain; PRIAM: N-acetylneuraminate synthase; SPTR: Sialic acid synthase; PFAM: NeuB family.
       0.408
ADV44125.1
Polysaccharide biosynthesis protein; COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: ddf:DEFDS_0379 polysaccharide biosynthesis protein; PFAM: polysaccharide biosynthesis protein; SPTR: Predicted protein; PFAM: Polysaccharide biosynthesis protein.
  
    0.401
Your Current Organism:
Bacteroides helcogenes
NCBI taxonomy Id: 693979
Other names: B. helcogenes P 36-108, Bacteroides helcogenes DSM 20613, Bacteroides helcogenes P 36-108, Bacteroides helcogenes str. P 36-108, Bacteroides helcogenes strain P 36-108
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.