STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADV44123.13-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; COGs: COG1083 CMP-N-acetylneuraminic acid synthetase; InterPro IPR003329: IPR010023: IPR006549; KEGG: mac:MA3766 acylneuraminate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; SPTR: Acylneuraminate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; HAD-superfamily hydrolase, subfamily IIIA. (387 aa)    
Predicted Functional Partners:
ADV44122.1
COGs: COG2089 Sialic acid synthase; InterPro IPR013132; KEGG: pca:Pcar_1277 sialic acid synthase; PFAM: N-acetylneuraminic acid synthase domain; PRIAM: N-acetylneuraminate synthase; SPTR: Sialic acid synthase; PFAM: NeuB family.
 
 0.999
ADV43926.1
COGs: COG2089 Sialic acid synthase; InterPro IPR013132: IPR013974: IPR020030: IPR006190; KEGG: tmt:Tmath_0718 pseudaminic acid synthase; PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; PRIAM: N-acetylneuraminate synthase; SPTR: Pseudaminic acid synthase; TIGRFAM: pseudaminic acid synthase; PFAM: SAF domain; NeuB family; TIGRFAM: pseudaminic acid synthase.
  
 0.852
ADV44127.1
Hypothetical protein; COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; KEGG: pmh:P9215_14191 pyridoxal phosphate-dependent enzyme; SPTR: Predicted protein; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.830
ADV44124.1
KEGG: kol:Kole_1286 hypothetical protein; SPTR: Predicted protein.
 
  
 0.828
ADV44126.1
KEGG: cby:CLM_3076 hypothetical protein; SPTR: CoA-binding domain-containing protein; PFAM: FemAB family.
       0.797
ADV44125.1
Polysaccharide biosynthesis protein; COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: ddf:DEFDS_0379 polysaccharide biosynthesis protein; PFAM: polysaccharide biosynthesis protein; SPTR: Predicted protein; PFAM: Polysaccharide biosynthesis protein.
     
 0.791
ADV44129.1
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: dfe:Dfer_4018 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1.
  
  
 0.741
ADV44128.1
Nucleotide sugar dehydrogenase; COGs: COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; InterPro IPR001732: IPR014026: IPR014027: IPR017476; KEGG: pdi:BDI_2219 putative UDP-glucose-6 dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; SPTR: Putative uncharacterized protein; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase [...]
       0.733
ADV44130.1
KEGG: sde:Sde_2120 hypothetical protein; SPTR: Predicted protein.
       0.705
ADV43496.1
2-dehydro-3-deoxyphosphooctonate aldolase; COGs: COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase; InterPro IPR006269: IPR006218; KEGG: bth:BT_4321 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; SPTR: 3-deoxy-8-phosphooctulonate synthase; TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I family; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase.
    
 0.641
Your Current Organism:
Bacteroides helcogenes
NCBI taxonomy Id: 693979
Other names: B. helcogenes P 36-108, Bacteroides helcogenes DSM 20613, Bacteroides helcogenes P 36-108, Bacteroides helcogenes str. P 36-108, Bacteroides helcogenes strain P 36-108
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.