STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADV44170.1Putative xylanase; COGs: COG0657 Esterase/lipase; KEGG: bth:BT_1087 putative xylanase; SPTR: Putative uncharacterized protein; PFAM: alpha/beta hydrolase fold. (291 aa)    
Predicted Functional Partners:
nuoC
NADH dehydrogenase subunit D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family.
    
   0.947
ADV44171.1
Oligopeptide transporter, OPT family; COGs: COG1297 membrane protein; InterPro IPR004813: IPR004814; KEGG: bth:BT_1086 putative oligopeptide transporter; PFAM: Oligopeptide transporter OPT superfamily protein; SPTR: Putative uncharacterized protein; TIGRFAM: oligopeptide transporter, OPT family; oligopeptide transporters, OPT superfamily; PFAM: OPT oligopeptide transporter protein; TIGRFAM: oligopeptide transporters, OPT superfamily; putative oligopeptide transporter, OPT family.
     
 0.847
ADV44169.1
Protein of unknown function DUF1460; InterPro IPR010846; KEGG: bfr:BF2036 putative xylanase; PFAM: protein of unknown function DUF1460; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1460).
 
    0.708
ADV45042.1
COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterProIPR011895: IPR017900: IPR002880: IPR019752: IPR 019456: IPR011766: IPR017896; KEGG: bth:BT_1747 pyruvate-flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; Pyruvate-flavodoxin oxidoreductase, EKR domain; thiamine pyrophosphate TPP-binding domain-containing protein; SPTR: Pyruvate:ferredoxin (Flavodoxin) oxidoreductase; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidored [...]
  
   0.683
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.613
ADV42935.1
InterPro IPR009081; KEGG: bfs:BF3116 putative acyl carrier protein; SPTR: Acyl carrier protein; PFAM: Phosphopantetheine attachment site.
   
 
 0.613
ADV44172.1
Protein of unknown function DUF1573; InterPro IPR011467; KEGG: bfs:BF2093 hypothetical protein; PFAM: protein of unknown function DUF1573; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1573).
       0.509
nuoA
NADH dehydrogenase subunit A; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family.
    
   0.481
ADV43399.1
Putative ferredoxin-type protein; COGs: COG0348 Polyferredoxin; InterPro IPR017896: IPR017900; KEGG: bth:BT_0963 putative ferredoxin-type protein; SPTR: Putative uncharacterized protein; PFAM: 4Fe-4S binding domain.
  
   0.473
rnfB
Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
  
   0.468
Your Current Organism:
Bacteroides helcogenes
NCBI taxonomy Id: 693979
Other names: B. helcogenes P 36-108, Bacteroides helcogenes DSM 20613, Bacteroides helcogenes P 36-108, Bacteroides helcogenes str. P 36-108, Bacteroides helcogenes strain P 36-108
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