STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADV44282.1Agmatine deiminase; COGs: COG2957 Peptidylarginine deiminase; InterPro IPR007466; KEGG: bth:BT_0876 hypothetical protein; PFAM: Porphyromonas-type peptidyl-arginine deiminase; PRIAM: Agmatine deiminase; SPTR: Putative uncharacterized protein; PFAM: Porphyromonas-type peptidyl-arginine deiminase. (370 aa)    
Predicted Functional Partners:
ADV44283.1
COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: bfs:BF2465 putative hydrolase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Putative uncharacterized protein; PFAM: Carbon-nitrogen hydrolase.
 
 0.999
speA
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine.
 
  
 0.950
ADV44281.1
Protein of unknown function DUF2148; COGs: COG4739 Uncharacterized protein containing a ferredoxin domain; InterPro IPR019224; KEGG: bth:BT_0877 ferredoxin domain-containing protein; PFAM: Protein of unknown function DUF2148; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized protein containing a ferredoxin domain (DUF2148).
       0.724
ADV44280.1
ABC transporter related protein; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439: IPR003593: IPR017871; KEGG: bth:BT_0878 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Putative uncharacterized protein; PFAM: ABC transporter.
       0.640
ADV44279.1
Conserved hypothetical protein CHP00245; COGs: COG0390 ABC-type uncharacterized transport system permease component; InterPro IPR005226; KEGG: bfs:BF2469 putative ABC transport system, membrane protein; PFAM: Conserved hypothetical protein CHP00245; SPTR: Putative uncharacterized protein; manually curated; PFAM: Uncharacterised protein family (UPF0014); TIGRFAM: conserved hypothetical protein TIGR00245.
       0.606
ADV44238.1
Protein of unknown function DUF490; InterPro IPR007452; KEGG: bfr:BF2432 hypothetical protein; PFAM: protein of unknown function DUF490; SPTR: Putative uncharacterized protein; PFAM: Family of unknown function (DUF490).
  
    0.442
Your Current Organism:
Bacteroides helcogenes
NCBI taxonomy Id: 693979
Other names: B. helcogenes P 36-108, Bacteroides helcogenes DSM 20613, Bacteroides helcogenes P 36-108, Bacteroides helcogenes str. P 36-108, Bacteroides helcogenes strain P 36-108
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