STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADV44607.1KEGG: pdi:BDI_0745 hypothetical protein; SPTR: DNA binding domain, excisionase family protein; TIGRFAM: DNA binding domain, excisionase family. (101 aa)    
Predicted Functional Partners:
ADV44606.1
KEGG: pdi:BDI_0746 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.932
ADV45105.1
KEGG: pdi:BDI_0746 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.795
ADV42212.1
KEGG: bfs:BF1793 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.782
ADV42198.1
KEGG: bfs:BF1731 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.772
ADV42204.1
KEGG: bfs:BF1737 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.772
ADV43767.1
DNA binding domain protein, excisionase family; InterPro IPR010093; KEGG: bvu:BVU_2478 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: DNA binding domain protein, excisionase family; TIGRFAM: DNA binding domain, excisionase family.
 
     0.762
ADV42914.1
KEGG: pdi:BDI_2142 mobilization protein; SPTR: Mobilization protein.
  
     0.751
ADV43798.1
Tetracycline regulation of excision, RteC; InterPro IPR018534; KEGG: bfr:BF3844 hypothetical protein; PFAM: Tetracycline regulation of excision, RteC; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2589); RteC protein.
 
     0.737
ADV42195.1
Tetracycline regulation of excision, RteC; InterPro IPR018534; KEGG: bfs:BF1728 hypothetical protein; PFAM: Tetracycline regulation of excision, RteC; SPTR: Putative uncharacterized protein; PFAM: RteC protein.
 
     0.731
ADV43037.1
Tetracycline regulation of excision, RteC; InterPro IPR018534; KEGG: bth:BT_0110 putative regulatory protein; PFAM: Tetracycline regulation of excision, RteC; SPTR: Putative uncharacterized protein; PFAM: RteC protein.
 
     0.714
Your Current Organism:
Bacteroides helcogenes
NCBI taxonomy Id: 693979
Other names: B. helcogenes P 36-108, Bacteroides helcogenes DSM 20613, Bacteroides helcogenes P 36-108, Bacteroides helcogenes str. P 36-108, Bacteroides helcogenes strain P 36-108
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