STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADV44780.1Integrase family protein; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: bfs:BF1685 putative bacteriophage integrase; PFAM: integrase family protein; SPTR: Putative uncharacterized protein; PFAM: Phage integrase family; Belongs to the 'phage' integrase family. (379 aa)    
Predicted Functional Partners:
xerC-2
Tyrosine recombinase XerC subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
 
 
 
 0.763
ADV42150.1
Integrase family protein; InterPro IPR002104; KEGG: bfs:BF3806 tyrosine site-specific recombinase; PFAM: integrase family protein; SPTR: Tyrosine type site-specific recombinase; PFAM: Phage integrase family; Belongs to the 'phage' integrase family.
 
 
 
 0.661
ADV43745.1
Integrase family protein; InterPro IPR002104; KEGG: bvu:BVU_2525 tyrosine type site-specific recombinase; PFAM: integrase family protein; SPTR: Putative uncharacterized protein; PFAM: Phage integrase family; Belongs to the 'phage' integrase family.
 
 
 
 0.650
ADV42914.1
KEGG: pdi:BDI_2142 mobilization protein; SPTR: Mobilization protein.
  
     0.617
ADV43627.1
Integrase family protein; InterPro IPR002104; KEGG: bvu:BVU_3179 integrase; PFAM: integrase family protein; SPTR: Predicted protein; PFAM: Phage integrase family; Belongs to the 'phage' integrase family.
 
 
 
 0.607
ADV43629.1
Hypothetical protein; KEGG: bfr:BF3455 tyrosine type site-specific recombinase; SPTR: Predicted protein.
 
 
 
 0.574
ADV45160.1
Hypothetical protein; KEGG: bfr:BF1988 tyrosine type site-specific recombinase; SPTR: Tyrosine type site-specific recombinase.
 
 
 
 0.526
ADV43719.1
DNA binding domain protein, excisionase family; InterPro IPR010093; KEGG: bth:BT_4616 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: DNA binding domain protein, excisionase family; PFAM: Bacteriophage Lambda NinG protein; TIGRFAM: DNA binding domain, excisionase family.
 
     0.518
ADV43630.1
Hypothetical protein; KEGG: bfr:BF3455 tyrosine type site-specific recombinase; SPTR: Predicted protein; Belongs to the 'phage' integrase family.
 
 
 
 0.505
ADV42213.1
KEGG: bfs:BF1794 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.437
Your Current Organism:
Bacteroides helcogenes
NCBI taxonomy Id: 693979
Other names: B. helcogenes P 36-108, Bacteroides helcogenes DSM 20613, Bacteroides helcogenes P 36-108, Bacteroides helcogenes str. P 36-108, Bacteroides helcogenes strain P 36-108
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.