STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADV44855.1KEGG: bth:BT_0247 hypothetical protein; SPTR: Putative uncharacterized protein. (208 aa)    
Predicted Functional Partners:
ADV44854.1
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR007627: IPR013249; KEGG: bfs:BF2975 putative RNA polymerase sigma factor; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: Putative uncharacterized protein; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
   
 
 0.866
ADV44856.1
Metallophosphoesterase; COGs: COG1408 phosphohydrolase; InterPro IPR004843; KEGG: bth:BT_0246 calcineurin-like phosphoesterase domain-containing protein; PFAM: metallophosphoesterase; SPTR: Putative uncharacterized protein; PFAM: Calcineurin-like phosphoesterase.
  
    0.856
ADV44852.1
Amidohydrolase; COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase; InterPro IPR006680: IPR002195; KEGG: bfs:BF2965 dihydroorotase; PFAM: amidohydrolase; SPTR: Dihydroorotase; PFAM: Amidohydrolase family; TIGRFAM: dihydroorotase, multifunctional complex type.
       0.728
ADV44853.1
COGs: COG1410 Methionine synthase I cobalamin-binding domain; InterPro IPR004223; KEGG: bth:BT_0249 5-methyltetrahydrofolate--homocysteine methyltransferase or methionine synthase; PFAM: Vitamin B12 dependent methionine synthase activation region; PRIAM: Methionine synthase; SPTR: Putative uncharacterized protein; PFAM: Vitamin B12 dependent methionine synthase, activation domain.
       0.728
ADV44851.1
COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: bth:BT_0251 dolichol-phosphate mannosyltransferase; PFAM: glycosyl transferase family 2; SPTR: Putative uncharacterized protein; PFAM: Glycosyl transferase family 2.
   
   0.688
ADV42298.1
KEGG: pdi:BDI_1009 hypothetical protein; SPTR: Putative uncharacterized protein.
   
 
 0.478
ADV43909.1
Peptidase C11 clostripain; InterPro IPR005077; KEGG: bfr:BF2740 clostripain-related protein; PFAM: peptidase C11 clostripain; SPTR: Putative uncharacterized protein; PFAM: Clostripain family.
   
 
 0.478
ADV44867.1
COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: bfs:BF2983 putative phospholipids biosynthesis-related protein; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: Putative uncharacterized protein; PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases.
  
    0.453
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
       0.448
ADV44302.1
Forkhead-associated protein; InterPro IPR000253; KEGG: bfs:BF2383 hypothetical protein; PFAM: Forkhead-associated protein; SPTR: Putative uncharacterized protein; PFAM: FHA domain.
   
 
 0.441
Your Current Organism:
Bacteroides helcogenes
NCBI taxonomy Id: 693979
Other names: B. helcogenes P 36-108, Bacteroides helcogenes DSM 20613, Bacteroides helcogenes P 36-108, Bacteroides helcogenes str. P 36-108, Bacteroides helcogenes strain P 36-108
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