STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADV44991.1Domain of unknown function DUF2520; COGs: COG5495 conserved hypothetical protein; InterPro IPR018931; KEGG: bfr:BF3283 hypothetical protein; PFAM: Domain of unknown function DUF2520; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF2520); Shikimate / quinate 5-dehydrogenase. (266 aa)    
Predicted Functional Partners:
ADV44992.1
KEGG: bfs:BF3123 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.853
ADV44993.1
COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: bth:BT_1680 putative NADH dehydrogenase/NAD(P)H nitroreductase; PFAM: nitroreductase; SPTR: Putative uncharacterized protein; PFAM: Nitroreductase family.
       0.853
ADV44990.1
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; COGs: COG1778 Low specificity phosphatase (HAD superfamily); InterPro IPR010023: IPR006549; KEGG: bfs:BF3121 putative lipopolysaccharide biosynthesis-related protein; SPTR: Putative uncharacterized protein; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; HAD-superfamily hydrolase, subfamily IIIA.
       0.800
ADV44989.1
Maf protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
       0.792
ADV44994.1
KEGG: bfs:BF3126 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.710
ADV44106.1
KEGG: bth:BT_0574 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: RNA polymerase Rpb6.
  
     0.538
panC
Pantothenate synthetase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
 
   
 0.491
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
       0.442
ADV45139.1
KEGG: bfs:BF3496 hypothetical protein; SPTR: Putative uncharacterized protein.
  
    0.437
ADV42415.1
Hypothetical protein; COGs: COG2971 N-acetylglucosamine kinase; KEGG: bfs:BF0382 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: BadF/BadG/BcrA/BcrD ATPase family.
  
     0.429
Your Current Organism:
Bacteroides helcogenes
NCBI taxonomy Id: 693979
Other names: B. helcogenes P 36-108, Bacteroides helcogenes DSM 20613, Bacteroides helcogenes P 36-108, Bacteroides helcogenes str. P 36-108, Bacteroides helcogenes strain P 36-108
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