STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADV45013.1InterPro IPR010144; KEGG: mta:Moth_0496 CRISPR-associated Csd1 family protein; PFAM: CRISPR-associated protein CT1133; SPTR: CRISPR-associated protein, CT1133; TIGRFAM: CRISPR-associated protein, Csd1 family; PFAM: CRISPR-associated protein (Cas_Csd1); TIGRFAM: CRISPR-associated protein, Csd1 family. (562 aa)    
Predicted Functional Partners:
ADV45012.1
CRISPR-associated protein, Csd2 family; COGs: COG3649 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR006482: IPR013418; KEGG: pdi:BDI_1181 hypothetical protein; PFAM: CRISPR-associated protein TM1801; SPTR: Uncharacterized protein predicted to be involved in DNA repair; TIGRFAM: CRISPR-associated protein, Csd2 family; CRISPR-associated protein, CT1132 family; PFAM: Family of unknown function (DUF694); TIGRFAM: CRISPR-associated protein, CT1132 family; CRISPR-associated protein, Csd2 family; CRISPR-associated protein, Csh2 family.
 
 
 
 0.995
ADV45014.1
CRISPR-associated protein Cas5 family; InterPro IPR013422: IPR010155: IPR021124; KEGG: mta:Moth_0497 CRISPR-associated Csd1 family protein; PFAM: CRISPR-associated protein, Cas5; SPTR: CRISPR-associated protein, CT1134; TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; PFAM: CRISPR-associated protein (Cas_Cas5); TIGRFAM: CRISPR-associated protein Cas5, Dvulg subtype; CRISPR-associated protein Cas5, N-terminal domain.
 
 
 
 0.988
ADV45015.1
Metal dependent phosphohydrolase; COGs: COG1203 helicase; InterProIPR014001: IPR001650: IPR006483: IPR006474: IPR 006674: IPR006935: IPR014021; KEGG: mta:Moth_0498 CRISPR-associated helicase Cas3 family protein protein; PFAM: type III restriction protein res subunit; metal-dependent phosphohydrolase HD sub domain; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: CRISPR-associated helicase Cas3, core; TIGRFAM: CRISPR-associated HD domain protein; CRISPR-associated helicase Cas3; PFAM: Helicase conserved C-terminal domain; HD domain; DEAD/DEAH box helica [...]
 
   
 0.965
cas2
CRISPR-associated protein, Cas2 family; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
   
 0.958
cas1
CRISPR-associated protein, Cas1 family; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
     0.956
ADV45011.1
CRISPR-associated exonuclease, Cas4 family; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family.
 
   
 0.956
ADV45016.1
KEGG: hso:HS_1527 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.783
ADV45017.1
Hypothetical protein.
       0.464
Your Current Organism:
Bacteroides helcogenes
NCBI taxonomy Id: 693979
Other names: B. helcogenes P 36-108, Bacteroides helcogenes DSM 20613, Bacteroides helcogenes P 36-108, Bacteroides helcogenes str. P 36-108, Bacteroides helcogenes strain P 36-108
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