Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MOC_2000LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (294 aa)    
Predicted Functional Partners:
MOC_3379
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.728
MOC_3853
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.695
MOC_0481
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.658
MOC_5569
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.617
MOC_5620
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.539
MOC_3820
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.503
MOC_2583
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.492
MOC_5084
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.491
MOC_3653
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.430
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.425
Your Current Organism:
Methylobacterium oryzae
NCBI taxonomy Id: 693986
Other names: M. oryzae CBMB20, Methylobacterium oryzae CBMB20, Methylobacterium oryzae str. CBMB20, Methylobacterium oryzae strain CBMB20
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